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  • Description

    tools for early stage NGS alignment file processing including fast sorting and duplicate marking.

  • Usage

    To list all executables provided by biobambam2, run: $ biogrids-list biobambam2 Copy to clipboard
  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install biobambam2 Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    G. Tischler and S. Leonard. 2014. biobambam: tools for read pair collation based algorithms on BAM files. Source Code for Biology and Medicine. 9: 13.

    • *Full citation information available through

  • Citation Note

    Please cite the following url: http://www.sanger.ac.uk/science/tools/biobambam
  • Keywords

    High-throughput sequencing

  • Default Versions

    Linux 64:  2.0.183 (376.0 MB)
    OS X INTEL:  2.0.72 (75.3 MB)

  • Other Versions

      Linux 64:

      2.0.72 (53.6 MB)
    • OS X INTEL:

  • Developers

    Andrew Whitwham, David K Jackson, German Tischler