an extension to Brian Kernighan's awk, with added support for several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q, and TAB-delimited formats with column names along with new built-in functions and a command line option to use TAB as the input/output delimiter. When the new functionality is not used, bioawk should behave exactly like the original BWK awk.
InstallationUse the following command to install this title with the CLI client:
$ biogrids-cli install bioawkAvailable operating systems: Linux 64, OS X INTEL
Citation NotePlease cite the following url: https://github.com/lh3/bioawk
Linux 64:  1.0 (306.0 KB)
OS X INTEL:  1.0 (164.4 KB)
Aaron R Quinlan, Heng Li