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BIGpre

  • Description

    A quality assessment package for next-genomics sequencing data. BIGpre contains all the functions of other quality assessment software, such as the correlation between forward and reverse reads, read GC-content distribution, and base Ns quality. More importantly, BIGpre incorporates associated programs to detect and remove duplicate reads after taking sequencing errors into account and trimming low quality reads from raw data as well.

  • Usage

    To list all executables provided by BIGpre, run: $ biogrids-list bigpre Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install bigpre Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    T. Zhang, Y. Luo, K. Liu, L. Pan, B. Zhang, J. Yu, and S. Hu. 2011. BIGpre: A Quality Assessment Package for Next-Generation Sequencing Data. Genomics, Proteomics & Bioinformatics. 9(6): 238-244.


    • *Full citation information available through

  • Keywords

    Read Quality Control

  • Default Versions

    Linux 64:  2.0.2 (24.2 MB)
    OS X INTEL:  2.0.2 (24.2 MB)

  • Developers

    Tongwu Zhang

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