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Supported Applications


  • Description

    is a bioinformatics tool for constructing the compacted de Bruijn graph from sequencing data.

  • Usage

    To list all executables provided by bcalm, run: $ biogrids-list bcalm Copy to clipboard
  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install bcalm Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    R. Chikhi, A. Limasset, and P. Medvedev. 2016. Compacting de Bruijn graphs from sequencing data quickly and in low memory. Bioinformatics (Oxford, England). 32(12): i201-i208.

    • *Full citation information available through