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Supported Applications


  • Description

    an efficient and versatile command-line application that computes multi-sample quality control metrics in a read-group aware manner.

  • Usage

    To list all executables provided by Alfred, run: $ biogrids-list alfred Copy to clipboard
  • Usage Notes

    Alfred includes extra script and sample data in the github repo. These are not installed in BioGrids. Download directly from the github repository:


  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install alfred Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    T. Rausch, M. H.-Y. Fritz, J. O. Korbel, and V. Benes. 2019. Alfred: interactive multi-sample BAM alignment statistics, feature counting and feature annotation for long- and short-read sequencing. Bioinformatics. 35(14): 2489-2491.

    • *Full citation information available through