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Supported Applications

A5

  • Description

    A5-miseq is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. A5-miseq can produce high-quality microbial genome assemblies on a laptop computer without any parameter tuning by automating the process of adapter trimming, quality filtering, error correction, contig and scaffold generation and detection of misassemblies.

  • Usage

    To list all executables provided by A5, run: $ biogrids-list a5 Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install a5 Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    D. Coil, G. Jospin, and A. E. Darling. 2015. A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data. Bioinformatics. 31(4): 587-589.


    • *Full citation information available through

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