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Supported Applications


  • Description

    Phantompeakqualtools computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays.

  • Usage

    To list all executables provided by phantompeakqualtools, run: $ biogrids-list phantompeakqualtools Copy to clipboard
  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install phantompeakqualtools Copy to clipboard Available operating systems: Linux 64
  • Primary Citation*

    S. G. Landt, G. K. Marinov, A. Kundaje, P. Kheradpour, F. Pauli, S. Batzoglou, B. E. Bernstein, P. Bickel, J. B. Brown, P. Cayting, Y. Chen, G. DeSalvo, C. Epstein, K. I. Fisher-Aylor, G. Euskirchen, M. Gerstein, J. Gertz, A. J. Hartemink, M. M. Hoffman, V. R. Iyer, Y. L. Jung, S. Karmakar, M. Kellis, P. V. Kharchenko, Q. Li, T. Liu, X. S. Liu, L. Ma, A. Milosavljevic, R. M. Myers, P. J. Park, M. J. Pazin, M. D. Perry, D. Raha, T. E. Reddy, J. Rozowsky, N. Shoresh, A. Sidow, M. Slattery, J. A. Stamatoyannopoulos, M. Y. Tolstorukov, K. P. White, S. Xi, P. J. Farnham, J. D. Lieb, B. J. Wold, and S. M.. 2012. ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome Res. 22(9): 1813-1831.

    • *Full citation information available through