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10xbamtofastq

  • Description

    tool for converting 10x BAMs produced by Cell Ranger, Space Ranger, Cell Ranger ATAC, Cell Ranger DNA, and Long Ranger back to FASTQ files that can be used as inputs to re-run analysis.

  • Usage

    To list all executables provided by 10xbamtofastq, run: $ biogrids-list 10xbamtofastq Copy to clipboard

  • Usage Notes

    10x_bamtofastq provides a single executable named: bamtofastq

    An executable with the same name is provided by biobambam2. In order to use bamtofastq from 10X you can set the variable _BAMTOFASTQ=10xbamtofastq.

    See https://sbgrid.org/wiki/capsules#managing-duplicate-executables for more details.

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install 10xbamtofastq Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Citation Note

    Please cite the website:


    https://github.com/10XGenomics/bamtofastq

  • Keywords

    Other

  • Default Versions

    Linux 64:  1.4.1 (17.4 MB)
    OS X INTEL:  1.4.1 (3.5 MB)

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