tool for converting 10x BAMs produced by Cell Ranger, Space Ranger, Cell Ranger ATAC, Cell Ranger DNA, and Long Ranger back to FASTQ files that can be used as inputs to re-run analysis.
10x_bamtofastq provides a single executable named: bamtofastq
An executable with the same name is provided by biobambam2. In order to use bamtofastq from 10X you can set the variable _BAMTOFASTQ=10xbamtofastq.
See https://sbgrid.org/wiki/capsules#managing-duplicate-executables for more details.
InstallationUse the following command to install this title with the CLI client:
$ biogrids-cli install 10xbamtofastqAvailable operating systems: Linux 64, OS X INTEL
Please cite the website:
Linux 64:  1.4.1 (17.4 MB)
OS X INTEL:  1.4.1 (3.5 MB)