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Supported Applications

Winnowmap

  • Description

    Winnowmap is a long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences.

  • Usage

    To list all executables provided by Winnowmap, run: $ biogrids-list winnowmap Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install winnowmap Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    C. Jain, A. Rhie, N. F. Hansen, S. Koren, and A. M. Phillippy. 2022. Long-read mapping to repetitive reference sequences using Winnowmap2. Nature methods. 19(6): 705-710.


    • *Full citation information available through

  • Keywords

    PacBio Sequencing

  • Default Versions

    Linux 64:  2.03 (17.8 MB)
    OS X INTEL:  2.03 (9.6 MB)

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