Supported Applications

Snakemake

Description

The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments, without the need to modify the workflow definition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment.
Usage
To list all executables provided by Snakemake, run: $ biogrids-list snakemake
Usage Notes

Snakemake requires python 3.6.5. When you install Snakemake through BioGrids you will also install python 3.6.5. This version of python will be available in the BioGrids environment but will not be set as the default. You can configure your default python versio using the .sbgrid.conf file. See: https://biogrids.org/wiki/versions
Installation
Use the following command to install this title with the CLI client: $ biogrids-cli install snakemake Available operating systems: Linux 64, OS X INTEL

Keywords

Genomics, High-throughput sequencing, Workflow Management System
Default Versions

Linux 64: 7.32.3 (726.8 MB)
OS X INTEL: 7.32.3 (670.0 MB)
Other Versions
- OS X INTEL:
  5.3.0 (3.7 KB) , 7.8.0 (537.9 MB)
Developers

Johannes Köster