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Pindel

  • Description

    can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

  • Usage

    To list all executables provided by Pindel, run: $ biogrids-list pindel Copy to clipboard

  • Usage Notes

    Pindel is developed largely by Kai Ye: https://github.com/genome/pindel

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install pindel Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    K. Ye, M. H. Schulz, Q. Long, R. Apweiler, and N. Z.. 2009. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics. 25(21): 2865-2871.


    • *Full citation information available through

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