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Jellyfish

  • Description

    a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers quickly by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

  • Usage

    To list all executables provided by Jellyfish, run: $ biogrids-list jellyfish Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install jellyfish Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Keywords

    High-throughput sequencing

  • Default Versions

    Linux 64:  2.3.0 (815.5 MB)
    OS X INTEL:  2.3.0 (701.6 MB)

  • Other Versions

      Linux 64:

      2.2.7 (21.3 MB) , 2.2.9 (2.8 MB)

    • OS X INTEL:

      2.2.6 (2.0 MB)

  • Developers

    Marçais Guillaume, Carl Kingsford

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