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dREG

  • Description

    Detection of Regulatory DNA Sequences using GRO-seq Data.

  • Usage

    To list all executables provided by dREG, run: $ biogrids-list dreg Copy to clipboard

  • Usage Notes

    BioGrids curated dREG does not require using bash to run the dREG scripts. The scripts should be called directly as executable programs. As an example:

    $ source /progtrams/biogrids.shrc $ export DREG_X=4a1643a $ run_predict.bsh ${PROJECT_DIR}/K562.chr21.plus.bw ${PROJECT_DIR}/K562.chr21.minus.bw ${PROJECT_DIR}k562.test ${MY_ASVM } 8 0

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install dreg Copy to clipboard Available operating systems: Linux 64

  • Primary Citation*

    C. G. Danko, S. L. Hyland, L. J. Core, A. L. Martins, C. T. Waters, H. W. Lee, V. G. Cheung, W. L. Kraus, J. T. Lis, and A. Siepel. 2015. Identification of active transcriptional regulatory elements from GRO-seq data. Nature methods. 12(5): 433-8.


    • *Full citation information available through

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