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Bowtie 2

  • Description

    an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.

  • Usage

    To list all executables provided by Bowtie 2, run: $ biogrids-list bowtie-2 Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install bowtie-2 Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    B. Langmead and S. L. Salzberg. 2012. Fast gapped-read alignment with Bowtie 2. Nature Methods. Nature Publishing Group, a division of Macmillan Publishers Limited. 9(4): 357-359.


    • *Full citation information available through

  • Keywords

    ChIP-Sequencing, DNA-Sequencing, High-throughput sequencing, Read Alignment, RNA-Sequencing, WGS Analysis

  • Default Versions

    Linux 64:  2.5.3 (52.4 MB)
    OS X INTEL:  2.5.3 (7.3 MB)

  • Other Versions

      Linux 64:

      2.2.7 (84.1 MB) , 2.2.8 (84.1 MB) , 2.2.9 (84.1 MB) , 2.3.2 (91.9 MB) , 2.3.5.1 (221.4 MB) , 2.4.4 (69.8 MB) , 2.5.2 (52.4 MB)

    • OS X INTEL:

      2.2.7 (31.5 MB) , 2.2.8 (31.5 MB) , 2.2.9 (31.3 MB) , 2.3.2 (47.5 MB) , 2.3.5.1 (39.8 MB) , 2.4.4 (6.3 MB) , 2.5.2 (7.2 MB)

  • Developers

    Ben Langmead, Steven Salzberg

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