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bioawk

  • Description

    an extension to Brian Kernighan's awk, with added support for several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q, and TAB-delimited formats with column names along with new built-in functions and a command line option to use TAB as the input/output delimiter. When the new functionality is not used, bioawk should behave exactly like the original BWK awk.

  • Usage

    To list all executables provided by bioawk, run: $ biogrids-list bioawk Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install bioawk Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Citation Note

    Please cite the following url: https://github.com/lh3/bioawk

  • Keywords

    Other

  • Default Versions

    Linux 64:  1.0 (306.1 KB)
    OS X INTEL:  1.0 (164.5 KB)

  • Developers

    Aaron R Quinlan, Heng Li

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