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Predictosaurus is a command-line tool designed for uncertainty-aware haplotype-based genomic variant effect prediction. It provides comprehensive functionality for building variant graphs, processing genomic features, and extracting peptide sequences. The tool integrates various bioinformatics processes to support efficient data analysis and visualization.

Vireo: Variational Inference for Reconstructing Ensemble Origin by expressed SNPs in multiplexed scRNA-seq data.

efficient & high-resolution dereplication of microbial genomes

Genomic mapping and alignment program for mRNA and EST sequences.

Fast phylogenetic diversity calculations

predicts the functional effects of genomic variants

a program for the next-generation web-based user interface for Project Jupyter. JupyterLab enables you to work with documents and activities such as Jupyter notebooks, text editors, terminals, and custom components in a flexible, integrated, and extensible manner.

Detection of Regulatory DNA Sequences using GRO-seq Data.

open source version of the widely used molecular visualization package developed by Warren DeLano.

rapid and standardized annotation of bacterial genomes & plasmids.