SBGrid Consortium homepage

A tool for mapping and performing quality control on Hi-C data

OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads.

(Sequence Alignment/Map) a generic format for storing large nucleotide sequence alignments that provides various utilities for manipulating alignments, including sorting, merging, indexing and generating alignments in a per-position format.

(Burrows-Wheeler Aligner) a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM.

a tool that helps redistributable software libraries to support CUDA applications for Linux.

an implementation of the inference pipeline of AlphaFold v2.0 using a completely new model that was entered in CASP14.

an open source software library for high performance numerical computation. Its flexible architecture allows easy deployment of computation across a variety of platforms (CPUs, GPUs, TPUs), and from desktops to clusters of servers to mobile and edge devices. Originally developed by researchers and engineers from the Google Brain team within Google’s AI organization, it comes with strong support for machine learning and deep learning, and the flexible numerical computation core is used across many other scientific domains.

an implementation of the inference pipeline of AlphaFold v2.0 using a completely new model that was entered in CASP14.

rapid and standardized annotation of bacterial genomes & plasmids.

Model Based Analysis for ChIP-Seq data.