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is a quality control and processing pipeline for High Throughput Sequencing data.

pdb-images is a command-line tool from PDBe EMBL-EBI for generating images of macromolecular structures from mmCIF or binary CIF structure files based on Mol*.

SeqVerify is a Python-based command line tool for analysis of whole genome sequencing data for gene-editing verification. It performs insertion site detection, copy number variation (CNV) analysis through CNVPytor, bacterial contamination detection through KRAKEN2 and BRACKEN, and variant calling and filtering aided by SnpEff and SnpSift.

OpenNucleome is an open-source software designed for conducting molecular dynamics (MD) simulations of the human nucleus. This software streamlines the process of setting up whole nucleus simulations through just a few lines of Python scripting.

A tool for mapping and performing quality control on Hi-C data

OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads.

(Sequence Alignment/Map) a generic format for storing large nucleotide sequence alignments that provides various utilities for manipulating alignments, including sorting, merging, indexing and generating alignments in a per-position format.

(Burrows-Wheeler Aligner) a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM.

a tool that helps redistributable software libraries to support CUDA applications for Linux.

an implementation of the inference pipeline of AlphaFold v2.0 using a completely new model that was entered in CASP14.