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an object-oriented Python library to analyze trajectories from molecular dynamics (MD) simulations in many popular formats. It can write most of these formats, too, together with atom selections suitable for visualization or native analysis tools.

tensorQTL is a GPU-enabled QTL mapper, achieving ~200-300 fold faster cis- and trans-QTL mapping compared to CPU-based implementations.

Visium Spatial Software Suite for analyzing and visualizing spatial gene and protein expression data

an assembly pipeline for bacterial genomes.

a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis.

a free open-source bioinformatics software for macOS, and Linux.

SAIGE is an R package developed with Rcpp for genome-wide association tests in large-scale data sets and biobanks.

a flexible dynamic language appropriate for scientific and numerical computing with performance comparable to traditional statically-typed languages.

a C++ program for whole genome regression modelling of large genome-wide association studies.

a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.