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  • BioGrids: an initiative to provide centralized, cross-disciplinary scientific software support, based on the SBGrid model. Read more in eLIFE and Acta Cryst.

  • Personal Installation Manager: a bioinfomatics app store; users install preferred applications/versions on laptops or personal workstations, with graphical or CLI interfaces for Mac or Linux. More details.

  • Capsules isolate the software runtime environment, encapsulating executables, libraries, and version-specific dependencies to provide conflict-free, zero-configuration access to structural biology software. Learn more.

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Recent Software Updates

Software updates
Feb 18 | HTSlib

a C library for reading/writing high-throughput sequencing data. >>

Feb 18 | DIAMOND

a high-throughput program for aligning a file of short DNA sequencing reads against a protein reference database such as NR, at 20,000 time… >>

Feb 18 | AlphaFold

an implementation of the inference pipeline of AlphaFold v2.0 using a completely new model that was entered in CASP14. >>

Feb 10 | TRUST4

a computational tool to analyze TCR and BCR sequences using unselected RNA sequencing data, profiled from fluid and solid tissues, includin… >>

Feb 10 | GEDI

a software platform for working with genomic data such as sequencing reads, sequences, per-base numeric values or annotations written in Ja… >>

Feb 06 | polychrom

a tool designed to build mechanistic models - i.e. models that simulates a biological process. >>

Feb 16 | R

a free software environment for statistical computing and graphics. >>

Feb 03 | SnpEff

genomic variant annotation and functional effect prediction toolbox. >>

Jan 28 | Python

a general-purpose, interpreted, object oriented, high-level dynamic programming language that emphasizes code readability. Its syntax allo… >>

Jan 24 | R

a free software environment for statistical computing and graphics. >>

Latest news

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Latest upgrades from SBGrid, including latest software updates, new members and special events. Published montly by SBGrid.

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Capsules Technology

We have recently published a manuscript describing our Capsules technology used to deploy SBGrid and BioGrids software collections. Read more in Acta Cryst Section D, special 75th ICUR anniversary issue, …

BioGrids for SBGrid Users Tutorial

For SBGrid users who are already familiar with the SBGrid software installation platform, members may opt-in in to include the BioGrids software stack in their installation. BioGrids in an SBGrid-style …

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Training Opportunities at HMS

A range of bioinformatics training opportunities are available to HMS researchers, with classes ranging from 2-hour introductory Python lectures to a 10-day in-depth NSG data analysis courses. Check out the …

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