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  • BioGrids: an initiative to provide centralized, cross-disciplinary scientific software support, based on the SBGrid model. Read more in eLIFE and Acta Cryst.

  • Personal Installation Manager: a bioinfomatics app store; users install preferred applications/versions on laptops or personal workstations, with graphical or CLI interfaces for Mac or Linux.

  • Capsules isolate the software runtime environment, encapsulating executables, libraries, and version-specific dependencies to provide conflict-free, zero-configuration access to structural biology software. Learn more.

SBGrid Consortium homepage

Recent Software Updates

Software updates
Nov 15 | Bakta

rapid and standardized annotation of bacterial genomes & plasmids. >>

Nov 01 | MACS3

Model Based Analysis for ChIP-Seq data. >>

Oct 31 | GATK

(Genome Analysis Toolkit) a software package developed to analyze high-throughput sequencing data capable of taking on projects of any size… >>

Oct 28 | Luna

is an open-source C/C++ software package for manipulating and analyzing polysomnographic recordings, with a focus on the sleep EEG. >>

Oct 18 | RBPBench

RBPBench is multi-function tool to evaluate CLIP-seq and other genomic region data using a comprehensive collection of known RNA-binding pr… >>

Oct 17 | DNAscent

DNAscent is software designed to detect the base analogues BrdU and EdU in single molecules of DNA sequenced on the Oxford Nanopore platform >>

Oct 07 | gsMap

gsMap (genetically informed spatial mapping of cells for complex traits) integrates spatial transcriptomics (ST) data with genome-wide asso… >>

Oct 07 | strobealign

a read mapper that is typically significantly faster than other read mappers while achieving comparable or better accuracy, see the perform… >>

Oct 04 | tidk

Identify and find telomeres, or telomeric repeats in a genome. >>

Oct 03 | LongReadSum

LongReadSum supports FASTA, FASTQ, BAM, FAST5, and sequencing_summary.txt file formats for quick generation of QC data in HTML and text for… >>

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Latest upgrades from SBGrid, including latest software updates, new members and special events. Published montly by SBGrid.

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Capsules Technology

We have recently published a manuscript describing our Capsules technology used to deploy SBGrid and BioGrids software collections. Read more in Acta Cryst Section D, special 75th ICUR anniversary issue, …

BioGrids for SBGrid Users Tutorial

For SBGrid users who are already familiar with the SBGrid software installation platform, members may opt-in in to include the BioGrids software stack in their installation. BioGrids in an SBGrid-style …

SBGrid/Harvard Shield

Training Opportunities at HMS

A range of bioinformatics training opportunities are available to HMS researchers, with classes ranging from 2-hour introductory Python lectures to a 10-day in-depth NSG data analysis courses. Check out the …

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