r_packages

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Available R Packages

Individual R packages are not listed in the BioGrids Supported Applications software list as they are too numerous.

R packages for the current default version and the latest version of R are detailed in the table below.

A complete install of all Bioconductor packages is also available for site-wide installations.

Package R 3.3.2 R 3.5.1
acepack 1.4.1 1.4.1
ade4 1.7-10 1.7-13
AnnotationDbi 1.36.2 1.44.0
AnnotationHub 2.6.5 2.14.5
askpass 1.1 1.1
assertthat 0.2.1 0.2.1
backports 1.1.2 1.1.4
base 3.3.2 3.5.1
base64enc 0.1-3 0.1-3
BH 1.69.0-1 1.69.0-1
Biobase 2.34.0 2.42.0
BiocGenerics 0.20.0 0.28.0
BiocParallel 1.8.2 1.16.6
biomaRt 2.30.0 2.38.0
Biostrings 2.42.1 2.50.2
bit 1.1-12 1.1-14
bit64 0.9-7 0.9-7
bitops 1.0-6 1.0-6
blob 1.1.0 1.1.1
boot 1.3-20 1.3-20
caTools 1.17.1 1.17.1.2
checkmate 1.8.5 1.9.1
class 7.3-14 7.3-15
cli 1.0.0 1.1.0
cluster 2.0.6 2.0.8
codetools 0.2-15 0.2-16
colorspace 1.3-2 1.4-1
compiler 3.3.2 3.5.1
crayon 1.3.4 1.3.4
curl 3.3 3.3
datasets 3.3.2 3.5.1
data.table 1.10.4-3 1.12.2
DBI 0.8 1.0.0
digest 0.6.15 0.6.18
dplyr 0.8.1 0.8.0.1
ensembldb 1.6.2 2.6.8
evaluate 0.10.1 0.13
fansi 0.4.0 0.4.0
foreign 0.8-69 0.8-71
Formula 1.2-2 1.2-3
futile.logger 1.4.3 1.4.3
futile.options 1.0.0 1.0.1
gdata 2.18.0 2.18.0
GenomeInfoDb 1.10.3 1.18.2
GenomicAlignments 1.10.1 1.18.1
GenomicFeatures 1.26.4 1.34.8
GenomicRanges 1.26.4 1.34.0
ggplot2 2.2.1 3.1.1
glue 1.3.1 1.3.1
gplots 3.0.1 3.0.1.1
graphics 3.3.2 3.5.1
grDevices 3.3.2 3.5.1
grid 3.3.2 3.5.1
gridExtra 2.3 2.3
gtable 0.2.0 0.3.0
gtools 3.5.0 3.8.1
highr 0.6 0.8
Hmisc 4.1-1 4.2-0
htmlTable 1.11.2 1.13.1
htmltools 0.3.6 0.3.6
htmlwidgets 1.0 1.3
httpuv 1.5.1 1.5.1
httr 1.4.0 1.4.0
igraph 1.2.4.1 1.2.4
interactiveDisplayBase 1.12.0 1.20.0
IRanges 2.8.2 2.16.0
jsonlite 1.5 1.6
KernSmooth 2.23-15 2.23-15
knitr 1.20 1.22
labeling 0.3 0.3
lambda.r 1.2 1.2.3
later 0.8.0 0.8.0
lattice 0.20-35 0.20-38
latticeExtra 0.6-28 0.6-28
lazyeval 0.2.1 0.2.2
magrittr 1.5 1.5
markdown 0.8 0.9
MASS 7.3-49 7.3-51.3
Matrix 1.2-12 1.2-17
memoise 1.1.0 1.1.0
methods 3.3.2 3.5.1
mgcv 1.8-23 1.8-28
mime 0.5 0.6
munsell 0.4.3 0.5.0
mvtnorm 1.0-7 1.0-10
nlme 3.1-131.1 3.1-139
nnet 7.3-12 7.3-12
openssl 1.4 1.3
Package Version Version
parallel 3.3.2 3.5.1
pheatmap 1.0.12 1.0.12
pillar 1.4.1 1.3.1
pkgconfig 2.0.2 2.0.2
plogr 0.2.0 0.2.0
plyr 1.8.4 1.8.4
png 0.1-7 0.1-7
promises 1.0.1 1.0.1
purrr 0.3.2 0.3.2
R6 2.4.0 2.4.0
RColorBrewer 1.1-2 1.1-2
Rcpp 1.0.1 1.0.1
RCurl 1.95-4.10 1.95-4.12
reshape2 1.4.3 1.4.3
rlang 0.3.4 0.3.4
rpart 4.1-13 4.1-15
Rsamtools 1.26.2 1.34.1
RSQLite 2.0 2.1.1
rstudioapi 0.7 0.10
rtracklayer 1.34.2 1.42.2
S4Vectors 0.12.2 0.20.1
scales 0.5.0 1.0.0
shiny 1.3.2 1.3.1
snow 0.4-2 0.4-3
sourcetools 0.1.7 0.1.7
spatial 7.3-11 7.3-11
splines 3.3.2 3.5.1
stats 3.3.2 3.5.1
stats4 3.3.2 3.5.1
stringi 1.1.7 1.4.3
stringr 1.3.0 1.4.0
SummarizedExperiment 1.4.0 1.12.0
survival 2.41-3 2.44-1.1
sys 3.2 3.1
tcltk 3.3.2 3.5.1
tibble 2.1.3 2.1.1
tidyr 0.8.3 0.8.3
tidyselect 0.2.5 0.2.5
tools 3.3.2 3.5.1
utf8 1.1.3 1.1.4
utils 3.3.2 3.5.1
viridis 0.5.0 0.5.1
viridisLite 0.3.0 0.3.0
withr 2.1.1 2.1.2
xtable 1.8-2 1.8-3
XVector 0.14.1 0.22.0
yaml 2.1.18 2.2.0
zlibbioc 1.20.0 1.28.0
zoo 1.8-1 1.8-5