Installing Software
Using the BioGrids Environment
Getting Help
Support for Site Administrators
Hardware Support Notes
R packages for the latest version of R are detailed in the table below.
Package Version | R Version | |
---|---|---|
acepack | 1.4.1 | 3.5.1 |
ade4 | 1.7-13 | 3.5.1 |
alakazam | 0.2.11 | 3.5.1 |
AneuFinderData | 1.10.0 | 3.5.1 |
AnnotationDbi | 1.44.0 | 3.5.1 |
AnnotationFilter | 1.6.0 | 3.5.1 |
AnnotationHub | 2.14.5 | 3.5.1 |
ape | 5.3 | 3.5.1 |
askpass | 1.1 | 3.5.1 |
assertive | 0.3-5 | 3.5.1 |
assertive.base | 0.0-7 | 3.5.1 |
assertive.code | 0.0-3 | 3.5.1 |
assertive.data | 0.0-3 | 3.5.1 |
assertive.data.uk | 0.0-2 | 3.5.1 |
assertive.data.us | 0.0-2 | 3.5.1 |
assertive.datetimes | 0.0-2 | 3.5.1 |
assertive.files | 0.0-2 | 3.5.1 |
assertive.matrices | 0.0-2 | 3.5.1 |
assertive.models | 0.0-2 | 3.5.1 |
assertive.numbers | 0.0-2 | 3.5.1 |
assertive.properties | 0.0-4 | 3.5.1 |
assertive.reflection | 0.0-4 | 3.5.1 |
assertive.sets | 0.0-3 | 3.5.1 |
assertive.strings | 0.0-3 | 3.5.1 |
assertive.types | 0.0-3 | 3.5.1 |
assertthat | 0.2.1 | 3.5.1 |
backports | 1.1.4 | 3.5.1 |
base64enc | 0.1-3 | 3.5.1 |
basejump | 0.7.2 | 3.5.1 |
bcbioBase | 0.4.1 | 3.5.1 |
bcbioSingleCell | 0.2.1 | 3.5.1 |
BH | 1.69.0-1 | 3.5.1 |
bibtex | 0.4.2 | 3.5.1 |
Biobase | 2.42.0 | 3.5.1 |
BiocGenerics | 0.28.0 | 3.5.1 |
BiocManager | 1.30.4 | 3.5.1 |
BiocParallel | 1.16.6 | 3.5.1 |
BiocVersion | 3.8.0 | 3.5.1 |
biomaRt | 2.38.0 | 3.5.1 |
Biostrings | 2.50.2 | 3.5.1 |
bit | 1.1-14 | 3.5.1 |
bit64 | 0.9-7 | 3.5.1 |
bitops | 1.0-6 | 3.5.1 |
blob | 1.1.1 | 3.5.1 |
broom | 0.5.2 | 3.5.1 |
callr | 3.2.0 | 3.5.1 |
caTools | 1.17.1.2 | 3.5.1 |
cellranger | 1.1.0 | 3.5.1 |
checkmate | 1.9.1 | 3.5.1 |
cli | 1.1.0 | 3.5.1 |
clipr | 0.6.0 | 3.5.1 |
colorspace | 1.4-1 | 3.5.1 |
cowplot | 0.9.4 | 3.5.1 |
crayon | 1.3.4 | 3.5.1 |
crosstalk | 1.0.0 | 3.5.1 |
curl | 3.3 | 3.5.1 |
data.table | 1.12.2 | 3.5.1 |
DBI | 1.0.0 | 3.5.1 |
dbplyr | 1.3.0 | 3.5.1 |
DelayedArray | 0.8.0 | 3.5.1 |
dendsort | 0.3.3 | 3.5.1 |
DEoptimR | 1.0-8 | 3.5.1 |
digest | 0.6.18 | 3.5.1 |
diptest | 0.75-7 | 3.5.1 |
DNAcopy | 1.56.0 | 3.5.1 |
doParallel | 1.0.14 | 3.5.1 |
doSNOW | 1.0.16 | 3.5.1 |
dplyr | 0.8.0.1 | 3.5.1 |
dtw | 1.20-1 | 3.5.1 |
ecp | 3.1.1 | 3.5.1 |
ellipsis | 0.1.0 | 3.5.1 |
ensembldb | 2.6.8 | 3.5.1 |
evaluate | 0.13 | 3.5.1 |
fansi | 0.4.0 | 3.5.1 |
fitdistrplus | 1.0-14 | 3.5.1 |
flexmix | 2.3-15 | 3.5.1 |
forcats | 0.4.0 | 3.5.1 |
foreach | 1.4.4 | 3.5.1 |
formatR | 1.6 | 3.5.1 |
Formula | 1.2-3 | 3.5.1 |
fpc | 2.1-11.1 | 3.5.1 |
fs | 1.2.7 | 3.5.1 |
futile.logger | 1.4.3 | 3.5.1 |
futile.options | 1.0.1 | 3.5.1 |
future | 1.12.0 | 3.5.1 |
future.apply | 1.2.0 | 3.5.1 |
gbRd | 0.4-11 | 3.5.1 |
gdata | 2.18.0 | 3.5.1 |
generics | 0.0.2 | 3.5.1 |
GenomeInfoDb | 1.18.2 | 3.5.1 |
GenomeInfoDbData | 1.2.0 | 3.5.1 |
GenomicAlignments | 1.18.1 | 3.5.1 |
GenomicFeatures | 1.34.8 | 3.5.1 |
GenomicRanges | 1.34.0 | 3.5.1 |
GGally | 1.4.0 | 3.5.1 |
ggdendro | 0.1-20 | 3.5.1 |
ggplot2 | 3.1.1 | 3.5.1 |
ggrepel | 0.8.0 | 3.5.1 |
ggridges | 0.5.1 | 3.5.1 |
globals | 0.12.4 | 3.5.1 |
glue | 1.3.1 | 3.5.1 |
gplots | 3.0.1.1 | 3.5.1 |
gridExtra | 2.3 | 3.5.1 |
grr | 0.9.5 | 3.5.1 |
gtable | 0.3.0 | 3.5.1 |
gtools | 3.8.1 | 3.5.1 |
haven | 2.1.0 | 3.5.1 |
hdf5r | 1.1.1 | 3.5.1 |
hexbin | 1.27.2 | 3.5.1 |
highr | 0.8 | 3.5.1 |
Hmisc | 4.2-0 | 3.5.1 |
hms | 0.4.2 | 3.5.1 |
htmlTable | 1.13.1 | 3.5.1 |
htmltools | 0.3.6 | 3.5.1 |
htmlwidgets | 1.3 | 3.5.1 |
httpuv | 1.5.1 | 3.5.1 |
httr | 1.4.0 | 3.5.1 |
ica | 1.0-2 | 3.5.1 |
igraph | 1.2.4 | 3.5.1 |
interactiveDisplayBase | 1.20.0 | 3.5.1 |
IRanges | 2.16.0 | 3.5.1 |
irlba | 2.3.3 | 3.5.1 |
iterators | 1.0.10 | 3.5.1 |
jsonlite | 1.6 | 3.5.1 |
kedd | 1.0.3 | 3.5.1 |
kernlab | 0.9-27 | 3.5.1 |
knitr | 1.22 | 3.5.1 |
labeling | 0.3 | 3.5.1 |
lambda.r | 1.2.3 | 3.5.1 |
lars | 1.2 | 3.5.1 |
later | 0.8.0 | 3.5.1 |
latticeExtra | 0.6-28 | 3.5.1 |
lazyeval | 0.2.2 | 3.5.1 |
listenv | 0.7.0 | 3.5.1 |
lmtest | 0.9-36 | 3.5.1 |
lsei | 1.2-0 | 3.5.1 |
lubridate | 1.7.4 | 3.5.1 |
magrittr | 1.5 | 3.5.1 |
markdown | 0.9 | 3.5.1 |
Matrix.utils | 0.9.7 | 3.5.1 |
matrixStats | 0.54.0 | 3.5.1 |
mclust | 5.4.3 | 3.5.1 |
memoise | 1.1.0 | 3.5.1 |
metap | 1.1 | 3.5.1 |
mime | 0.6 | 3.5.1 |
mixtools | 1.1.0 | 3.5.1 |
modelr | 0.1.4 | 3.5.1 |
modeltools | 0.2-22 | 3.5.1 |
munsell | 0.5.0 | 3.5.1 |
mvtnorm | 1.0-10 | 3.5.1 |
npsurv | 0.4-0 | 3.5.1 |
openssl | 1.3 | 3.5.1 |
openxlsx | 4.1.0 | 3.5.1 |
pbapply | 1.4-0 | 3.5.1 |
pheatmap | 1.0.12 | 3.5.1 |
pillar | 1.3.1 | 3.5.1 |
pkgconfig | 2.0.2 | 3.5.1 |
plogr | 0.2.0 | 3.5.1 |
plotly | 4.9.0 | 3.5.1 |
plyr | 1.8.4 | 3.5.1 |
png | 0.1-7 | 3.5.1 |
prabclus | 2.2-7 | 3.5.1 |
prettyunits | 1.0.2 | 3.5.1 |
processx | 3.3.0 | 3.5.1 |
progress | 1.2.0 | 3.5.1 |
promises | 1.0.1 | 3.5.1 |
ProtGenerics | 1.14.0 | 3.5.1 |
proxy | 0.4-23 | 3.5.1 |
ps | 1.3.0 | 3.5.1 |
purrr | 0.3.2 | 3.5.1 |
R.methodsS3 | 1.7.1 | 3.5.1 |
R.oo | 1.22.0 | 3.5.1 |
R.utils | 2.8.0 | 3.5.1 |
R6 | 2.4.0 | 3.5.1 |
RANN | 2.6.1 | 3.5.1 |
RColorBrewer | 1.1-2 | 3.5.1 |
Rcpp | 1.0.1 | 3.5.1 |
RcppEigen | 0.3.3.5.0 | 3.5.1 |
RcppProgress | 0.4.1 | 3.5.1 |
RCurl | 1.95-4.12 | 3.5.1 |
Rdpack | 0.11-0 | 3.5.1 |
rdrop2 | 0.8.1 | 3.5.1 |
readr | 1.3.1 | 3.5.1 |
readxl | 1.3.1 | 3.5.1 |
rematch | 1.0.1 | 3.5.1 |
remotes | 2.0.4 | 3.5.1 |
ReorderCluster | 1.0 | 3.5.1 |
reprex | 0.2.1 | 3.5.1 |
reshape | 0.8.8 | 3.5.1 |
reshape2 | 1.4.3 | 3.5.1 |
reticulate | 1.12 | 3.5.1 |
rhdf5 | 2.26.2 | 3.5.1 |
rio | 0.5.16 | 3.5.1 |
rlang | 0.3.4 | 3.5.1 |
rmarkdown | 1.12 | 3.5.1 |
robustbase | 0.93-4 | 3.5.1 |
ROCR | 1.0-7 | 3.5.1 |
Rsamtools | 1.34.1 | 3.5.1 |
RSQLite | 2.1.1 | 3.5.1 |
rstudioapi | 0.10 | 3.5.1 |
rsvd | 1.0.0 | 3.5.1 |
rtracklayer | 1.42.2 | 3.5.1 |
Rtsne | 0.15 | 3.5.1 |
rvest | 0.3.3 | 3.5.1 |
S4Vectors | 0.20.1 | 3.5.1 |
scales | 1.0.0 | 3.5.1 |
scrm | 1.7.3-1 | 3.5.1 |
sctransform | 0.2.0 | 3.5.1 |
SDMTools | 1.1-221 | 3.5.1 |
segmented | 0.5-3.0 | 3.5.1 |
selectr | 0.4-1 | 3.5.1 |
seqinr | 3.4-5 | 3.5.1 |
sessioninfo | 1.1.1 | 3.5.1 |
Seurat | 3.0.0 | 3.5.1 |
shazam | 0.1.11 | 3.5.1 |
shiny | 1.3.1 | 3.5.1 |
SingleCellExperiment | 1.4.1 | 3.5.1 |
snow | 0.4-3 | 3.5.1 |
sourcetools | 0.1.7 | 3.5.1 |
stringi | 1.4.3 | 3.5.1 |
stringr | 1.4.0 | 3.5.1 |
SummarizedExperiment | 1.12.0 | 3.5.1 |
sys | 3.1 | 3.5.1 |
tibble | 2.1.1 | 3.5.1 |
tidyr | 0.8.3 | 3.5.1 |
tidyselect | 0.2.5 | 3.5.1 |
tidyverse | 1.2.1 | 3.5.1 |
tigger | 0.3.1 | 3.5.1 |
tinytex | 0.12 | 3.5.1 |
trimcluster | 0.1-2.1 | 3.5.1 |
tsne | 0.1-3 | 3.5.1 |
utf8 | 1.1.4 | 3.5.1 |
viridis | 0.5.1 | 3.5.1 |
viridisLite | 0.3.0 | 3.5.1 |
whisker | 0.3-2 | 3.5.1 |
withr | 2.1.2 | 3.5.1 |
xfun | 0.6 | 3.5.1 |
XML | 3.98-1.19 | 3.5.1 |
xml2 | 1.2.0 | 3.5.1 |
xtable | 1.8-3 | 3.5.1 |
XVector | 0.22.0 | 3.5.1 |
yaml | 2.2.0 | 3.5.1 |
zip | 2.0.1 | 3.5.1 |
zlibbioc | 1.28.0 | 3.5.1 |
zoo | 1.8-5 | 3.5.1 |
base | 3.5.1 | 3.5.1 |
boot | 1.3-20 | 3.5.1 |
class | 7.3-15 | 3.5.1 |
cluster | 2.0.8 | 3.5.1 |
codetools | 0.2-16 | 3.5.1 |
compiler | 3.5.1 | 3.5.1 |
datasets | 3.5.1 | 3.5.1 |
foreign | 0.8-71 | 3.5.1 |
graphics | 3.5.1 | 3.5.1 |
grDevices | 3.5.1 | 3.5.1 |
grid | 3.5.1 | 3.5.1 |
KernSmooth | 2.23-15 | 3.5.1 |
lattice | 0.20-38 | 3.5.1 |
MASS | 7.3-51.3 | 3.5.1 |
Matrix | 1.2-17 | 3.5.1 |
methods | 3.5.1 | 3.5.1 |
mgcv | 1.8-28 | 3.5.1 |
nlme | 3.1-139 | 3.5.1 |
nnet | 7.3-12 | 3.5.1 |
parallel | 3.5.1 | 3.5.1 |
Rhdf5lib | 1.4.3 | 3.5.1 |
rpart | 4.1-15 | 3.5.1 |
spatial | 7.3-11 | 3.5.1 |
splines | 3.5.1 | 3.5.1 |
stats | 3.5.1 | 3.5.1 |
stats4 | 3.5.1 | 3.5.1 |
survival | 2.44-1.1 | 3.5.1 |
tcltk | 3.5.1 | 3.5.1 |
tools | 3.5.1 | 3.5.1 |
utils | 3.5.1 | 3.5.1 |
This version of the page was edited by James Vincent at 2019-07-29 14:52:51. View the most recent version.