.obsidian/core-plugins.json
... ...
@@ -27,5 +27,7 @@
27 27
"file-recovery": true,
28 28
"publish": false,
29 29
"sync": false,
30
- "webviewer": false
30
+ "webviewer": false,
31
+ "footnotes": false,
32
+ "bases": true
31 33
}
... ...
\ No newline at end of file
.obsidian/workspace.json
... ...
@@ -13,12 +13,12 @@
13 13
"state": {
14 14
"type": "markdown",
15 15
"state": {
16
- "file": "tutorials.md",
16
+ "file": "client_CLI_usage.md",
17 17
"mode": "source",
18 18
"source": true
19 19
},
20 20
"icon": "lucide-file",
21
- "title": "tutorials"
21
+ "title": "client_CLI_usage"
22 22
}
23 23
}
24 24
]
... ...
@@ -161,10 +161,11 @@
161 161
}
162 162
],
163 163
"direction": "horizontal",
164
- "width": 327.5
164
+ "width": 204.5
165 165
},
166 166
"left-ribbon": {
167 167
"hiddenItems": {
168
+ "bases:Create new base": false,
168 169
"switcher:Open quick switcher": false,
169 170
"graph:Open graph view": false,
170 171
"canvas:Create new canvas": false,
... ...
@@ -176,6 +177,9 @@
176 177
},
177 178
"active": "2a5b58d4cf8b7f2c",
178 179
"lastOpenFiles": [
180
+ "client_install.md",
181
+ "client_usage.md",
182
+ "tutorials.md",
179 183
"mailinglist.md",
180 184
"downloads.md",
181 185
"Home.md",
... ...
@@ -185,8 +189,6 @@
185 189
"out.html~",
186 190
"out.html",
187 191
"getting_started.md",
188
- "client_usage.md",
189
- "client_install.md",
190 192
"client_CLI_install.md",
191 193
"_Sidebar.md"
192 194
]
client_CLI_usage.md
... ...
@@ -67,7 +67,7 @@ Information about each title, including a description and links to documentation
67 67
### Example : Installing samtools
68 68
69 69
```
70
-$ ./biogrids info samtools
70
+$ biogrids-cli info samtools
71 71
72 72
Package: SAMtools
73 73
Name slug: samtools
... ...
@@ -95,7 +95,7 @@ Links:
95 95
96 96
To install:
97 97
```
98
-$ biogrids install samtools
98
+$ biogrids-cli install samtools
99 99
100 100
samtools@1.5 for i386-mac installed
101 101
Updating installation configuration...
... ...
@@ -105,7 +105,7 @@ Updating installation configuration...
105 105
106 106
### Example : Removing samtools
107 107
108
- $ biogrids remove samtools
108
+ $ biogrids-cli remove samtools
109 109
110 110
results in :
111 111
... ...
@@ -120,7 +120,7 @@ Default versions are installed for each application. BioGrids makes available se
120 120
121 121
To do so, specify the version after the title name with an @ symbol. Use the *biogrids info <title>* command to see all available versions.
122 122
123
- $ biogrids info samtools
123
+ $ biogrids-cli info samtools
124 124
125 125
```
126 126
Package: SAMtools
... ...
@@ -150,7 +150,7 @@ Links:
150 150
151 151
To install samtools version 1.4.1, add the version string like so:
152 152
153
- $ biogrids install samtools@1.4.1
153
+ $ biogrids-cli install samtools@1.4.1
154 154
155 155
which will produce :
156 156
... ...
@@ -161,7 +161,7 @@ Updating installation configuration..
161 161
162 162
Check which versions are installed with the biogrids info command again
163 163
164
- $ biogrids info samtools
164
+ $ biogrids-cli info samtools
165 165
166 166
```
167 167
Package: SAMtools