5a40b4a94441a82d4ed54b547ef4f4949492dfaf
workshops.md
... | ... | @@ -79,6 +79,44 @@ May 15, 2019 - 10:30am | TMEC 106 | [Register Here](https://docs.google.co |
79 | 79 | |
80 | 80 | Complete workshop data files and scripts: [biogrids_workshop.tar.gz](downloads/biogrids_workshop.tar.gz) |
81 | 81 | |
82 | +--- |
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83 | + |
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84 | +### Install and activate BioGrids CLI |
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85 | + |
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86 | + |
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87 | +Download and install biogrids CLI client then run: |
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88 | +``` |
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89 | +biogrids activate <site name> <user name> <activation key> |
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90 | +``` |
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91 | +#### Linux |
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92 | +``` |
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93 | +curl -kLO https://biogrids.org/wiki/downloads/biogrids-1.0.694-Linux.tgz |
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94 | +tar zxf biogrids-1.0.694-Linux.tgz |
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95 | +cd biogrids-1.0.694-Linux |
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96 | +``` |
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97 | + |
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98 | +#### OSX |
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99 | +``` |
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100 | +curl -kLO https://biogrids.org/wiki/downloads/biogrids-1.0.694-Darwin.tgz |
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101 | +tar zxf biogrids-1.0.694-Darwin.tgz |
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102 | +cd biogrids-1.0.694-Darwin |
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103 | +``` |
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104 | + |
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105 | +#### Run biogrids |
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106 | +``` |
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107 | +./biogrids activate biogrid-production jvinent1 70rYFTDnmCr93VUklfbf1s3M4jdyC9bFVYHew== |
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108 | +./biogrids install fastqc trimmomatic samtools star subread igv |
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109 | +``` |
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110 | + |
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111 | +Change back to home directory |
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112 | +``` |
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113 | +cd |
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114 | +``` |
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115 | + |
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116 | +### Install software with BioGrids |
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117 | +### Download and uncompress tutorial files |
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118 | +### Run RNA-Seq workflow |
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119 | + |
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82 | 120 | Download then uncompress: |
83 | 121 | |
84 | 122 | ``` |