Installing Software
Using the BioGrids Environment
Getting Help
Support for Site Administrators
Hardware Support Notes
Individual R packages are not listed in the BioGrids Supported Applications software list as they are too numerous.
R packages for the current default version and the latest version of R are detailed in the table below.
If you would like to use a package that is not currently available through BioGrids send a request to: help@biogrids.org.
A complete install of all Bioconductor packages is also available for site-wide installations.
Package | R 3.3.2 | R 3.5.1 |
---|---|---|
acepack | 1.4.1 | 1.4.1 |
ade4 | 1.7-10 | 1.7-13 |
AnnotationDbi | 1.36.2 | 1.44.0 |
AnnotationHub | 2.6.5 | 2.14.5 |
askpass | 1.1 | 1.1 |
assertthat | 0.2.1 | 0.2.1 |
backports | 1.1.2 | 1.1.4 |
base | 3.3.2 | 3.5.1 |
base64enc | 0.1-3 | 0.1-3 |
BH | 1.69.0-1 | 1.69.0-1 |
Biobase | 2.34.0 | 2.42.0 |
BiocGenerics | 0.20.0 | 0.28.0 |
BiocParallel | 1.8.2 | 1.16.6 |
biomaRt | 2.30.0 | 2.38.0 |
Biostrings | 2.42.1 | 2.50.2 |
bit | 1.1-12 | 1.1-14 |
bit64 | 0.9-7 | 0.9-7 |
bitops | 1.0-6 | 1.0-6 |
blob | 1.1.0 | 1.1.1 |
boot | 1.3-20 | 1.3-20 |
caTools | 1.17.1 | 1.17.1.2 |
checkmate | 1.8.5 | 1.9.1 |
class | 7.3-14 | 7.3-15 |
cli | 1.0.0 | 1.1.0 |
cluster | 2.0.6 | 2.0.8 |
codetools | 0.2-15 | 0.2-16 |
colorspace | 1.3-2 | 1.4-1 |
compiler | 3.3.2 | 3.5.1 |
crayon | 1.3.4 | 1.3.4 |
curl | 3.3 | 3.3 |
datasets | 3.3.2 | 3.5.1 |
data.table | 1.10.4-3 | 1.12.2 |
DBI | 0.8 | 1.0.0 |
digest | 0.6.15 | 0.6.18 |
dplyr | 0.8.1 | 0.8.0.1 |
ensembldb | 1.6.2 | 2.6.8 |
evaluate | 0.10.1 | 0.13 |
fansi | 0.4.0 | 0.4.0 |
foreign | 0.8-69 | 0.8-71 |
Formula | 1.2-2 | 1.2-3 |
futile.logger | 1.4.3 | 1.4.3 |
futile.options | 1.0.0 | 1.0.1 |
gdata | 2.18.0 | 2.18.0 |
GenomeInfoDb | 1.10.3 | 1.18.2 |
GenomicAlignments | 1.10.1 | 1.18.1 |
GenomicFeatures | 1.26.4 | 1.34.8 |
GenomicRanges | 1.26.4 | 1.34.0 |
ggplot2 | 2.2.1 | 3.1.1 |
glue | 1.3.1 | 1.3.1 |
gplots | 3.0.1 | 3.0.1.1 |
graphics | 3.3.2 | 3.5.1 |
grDevices | 3.3.2 | 3.5.1 |
grid | 3.3.2 | 3.5.1 |
gridExtra | 2.3 | 2.3 |
gtable | 0.2.0 | 0.3.0 |
gtools | 3.5.0 | 3.8.1 |
highr | 0.6 | 0.8 |
Hmisc | 4.1-1 | 4.2-0 |
htmlTable | 1.11.2 | 1.13.1 |
htmltools | 0.3.6 | 0.3.6 |
htmlwidgets | 1.0 | 1.3 |
httpuv | 1.5.1 | 1.5.1 |
httr | 1.4.0 | 1.4.0 |
igraph | 1.2.4.1 | 1.2.4 |
interactiveDisplayBase | 1.12.0 | 1.20.0 |
IRanges | 2.8.2 | 2.16.0 |
jsonlite | 1.5 | 1.6 |
KernSmooth | 2.23-15 | 2.23-15 |
knitr | 1.20 | 1.22 |
labeling | 0.3 | 0.3 |
lambda.r | 1.2 | 1.2.3 |
later | 0.8.0 | 0.8.0 |
lattice | 0.20-35 | 0.20-38 |
latticeExtra | 0.6-28 | 0.6-28 |
lazyeval | 0.2.1 | 0.2.2 |
magrittr | 1.5 | 1.5 |
markdown | 0.8 | 0.9 |
MASS | 7.3-49 | 7.3-51.3 |
Matrix | 1.2-12 | 1.2-17 |
memoise | 1.1.0 | 1.1.0 |
methods | 3.3.2 | 3.5.1 |
mgcv | 1.8-23 | 1.8-28 |
mime | 0.5 | 0.6 |
munsell | 0.4.3 | 0.5.0 |
mvtnorm | 1.0-7 | 1.0-10 |
nlme | 3.1-131.1 | 3.1-139 |
nnet | 7.3-12 | 7.3-12 |
openssl | 1.4 | 1.3 |
Package | Version | Version |
parallel | 3.3.2 | 3.5.1 |
pheatmap | 1.0.12 | 1.0.12 |
pillar | 1.4.1 | 1.3.1 |
pkgconfig | 2.0.2 | 2.0.2 |
plogr | 0.2.0 | 0.2.0 |
plyr | 1.8.4 | 1.8.4 |
png | 0.1-7 | 0.1-7 |
promises | 1.0.1 | 1.0.1 |
purrr | 0.3.2 | 0.3.2 |
R6 | 2.4.0 | 2.4.0 |
RColorBrewer | 1.1-2 | 1.1-2 |
Rcpp | 1.0.1 | 1.0.1 |
RCurl | 1.95-4.10 | 1.95-4.12 |
reshape2 | 1.4.3 | 1.4.3 |
rlang | 0.3.4 | 0.3.4 |
rpart | 4.1-13 | 4.1-15 |
Rsamtools | 1.26.2 | 1.34.1 |
RSQLite | 2.0 | 2.1.1 |
rstudioapi | 0.7 | 0.10 |
rtracklayer | 1.34.2 | 1.42.2 |
S4Vectors | 0.12.2 | 0.20.1 |
scales | 0.5.0 | 1.0.0 |
shiny | 1.3.2 | 1.3.1 |
snow | 0.4-2 | 0.4-3 |
sourcetools | 0.1.7 | 0.1.7 |
spatial | 7.3-11 | 7.3-11 |
splines | 3.3.2 | 3.5.1 |
stats | 3.3.2 | 3.5.1 |
stats4 | 3.3.2 | 3.5.1 |
stringi | 1.1.7 | 1.4.3 |
stringr | 1.3.0 | 1.4.0 |
SummarizedExperiment | 1.4.0 | 1.12.0 |
survival | 2.41-3 | 2.44-1.1 |
sys | 3.2 | 3.1 |
tcltk | 3.3.2 | 3.5.1 |
tibble | 2.1.3 | 2.1.1 |
tidyr | 0.8.3 | 0.8.3 |
tidyselect | 0.2.5 | 0.2.5 |
tools | 3.3.2 | 3.5.1 |
utf8 | 1.1.3 | 1.1.4 |
utils | 3.3.2 | 3.5.1 |
viridis | 0.5.0 | 0.5.1 |
viridisLite | 0.3.0 | 0.3.0 |
withr | 2.1.1 | 2.1.2 |
xtable | 1.8-2 | 1.8-3 |
XVector | 0.14.1 | 0.22.0 |
yaml | 2.1.18 | 2.2.0 |
zlibbioc | 1.20.0 | 1.28.0 |
zoo | 1.8-1 | 1.8-5 |
This version of the page was edited by James Vincent at 2019-07-29 17:40:34. View the most recent version.