r_packages

Available R Packages

Individual R packages are not listed in the BioGrids Supported Applications software list as they are too numerous.

R packages for the current default version and the latest version of R are detailed in the table below.

A complete install of all Bioconductor packages is also available for site-wide installations. |Package|R 3.3.2 |R 3.5.1 |---|---|---| |acepack|1.4.1|1.4.1| |ade4|1.7-10|1.7-13| |AnnotationDbi|1.36.2|1.44.0| |AnnotationHub|2.6.5|2.14.5| |askpass|1.1|1.1| |assertthat|0.2.1|0.2.1| |backports|1.1.2|1.1.4| |base|3.3.2|3.5.1| |base64enc|0.1-3|0.1-3| |BH|1.69.0-1|1.69.0-1| |Biobase|2.34.0|2.42.0| |BiocGenerics|0.20.0|0.28.0| |BiocParallel|1.8.2|1.16.6| |biomaRt|2.30.0|2.38.0| |Biostrings|2.42.1|2.50.2| |bit|1.1-12|1.1-14| |bit64|0.9-7|0.9-7| |bitops|1.0-6|1.0-6| |blob|1.1.0|1.1.1| |boot|1.3-20|1.3-20| |caTools|1.17.1|1.17.1.2| |checkmate|1.8.5|1.9.1| |class|7.3-14|7.3-15| |cli|1.0.0|1.1.0| |cluster|2.0.6|2.0.8| |codetools|0.2-15|0.2-16| |colorspace|1.3-2|1.4-1| |compiler|3.3.2|3.5.1| |crayon|1.3.4|1.3.4| |curl|3.3|3.3| |datasets|3.3.2|3.5.1| |data.table|1.10.4-3|1.12.2| |DBI|0.8|1.0.0| |digest|0.6.15|0.6.18| |dplyr|0.8.1|0.8.0.1| |ensembldb|1.6.2|2.6.8| |evaluate|0.10.1|0.13| |fansi|0.4.0|0.4.0| |foreign|0.8-69|0.8-71| |Formula|1.2-2|1.2-3| |futile.logger|1.4.3|1.4.3| |futile.options|1.0.0|1.0.1| |gdata|2.18.0|2.18.0| |GenomeInfoDb|1.10.3|1.18.2| |GenomicAlignments|1.10.1|1.18.1| |GenomicFeatures|1.26.4|1.34.8| |GenomicRanges|1.26.4|1.34.0| |ggplot2|2.2.1|3.1.1| |glue|1.3.1|1.3.1| |gplots|3.0.1|3.0.1.1| |graphics|3.3.2|3.5.1| |grDevices|3.3.2|3.5.1| |grid|3.3.2|3.5.1| |gridExtra|2.3|2.3| |gtable|0.2.0|0.3.0| |gtools|3.5.0|3.8.1| |highr|0.6|0.8| |Hmisc|4.1-1|4.2-0| |htmlTable|1.11.2|1.13.1| |htmltools|0.3.6|0.3.6| |htmlwidgets|1.0|1.3| |httpuv|1.5.1|1.5.1| |httr|1.4.0|1.4.0| |igraph|1.2.4.1|1.2.4| |interactiveDisplayBase|1.12.0|1.20.0| |IRanges|2.8.2|2.16.0| |jsonlite|1.5|1.6| |KernSmooth|2.23-15|2.23-15| |knitr|1.20|1.22| |labeling|0.3|0.3| |lambda.r|1.2|1.2.3| |later|0.8.0|0.8.0| |lattice|0.20-35|0.20-38| |latticeExtra|0.6-28|0.6-28| |lazyeval|0.2.1|0.2.2| |magrittr|1.5|1.5| |markdown|0.8|0.9| |MASS|7.3-49|7.3-51.3| |Matrix|1.2-12|1.2-17| |memoise|1.1.0|1.1.0| |methods|3.3.2|3.5.1| |mgcv|1.8-23|1.8-28| |mime|0.5|0.6| |munsell|0.4.3|0.5.0| |mvtnorm|1.0-7|1.0-10| |nlme|3.1-131.1|3.1-139| |nnet|7.3-12|7.3-12| |openssl|1.4|1.3| |Package|Version|Version| |parallel|3.3.2|3.5.1| |pheatmap|1.0.12|1.0.12| |pillar|1.4.1|1.3.1| |pkgconfig|2.0.2|2.0.2| |plogr|0.2.0|0.2.0| |plyr|1.8.4|1.8.4| |png|0.1-7|0.1-7| |promises|1.0.1|1.0.1| |purrr|0.3.2|0.3.2| |R6|2.4.0|2.4.0| |RColorBrewer|1.1-2|1.1-2| |Rcpp|1.0.1|1.0.1| |RCurl|1.95-4.10|1.95-4.12| |reshape2|1.4.3|1.4.3| |rlang|0.3.4|0.3.4| |rpart|4.1-13|4.1-15| |Rsamtools|1.26.2|1.34.1| |RSQLite|2.0|2.1.1| |rstudioapi|0.7|0.10| |rtracklayer|1.34.2|1.42.2| |S4Vectors|0.12.2|0.20.1| |scales|0.5.0|1.0.0| |shiny|1.3.2|1.3.1| |snow|0.4-2|0.4-3| |sourcetools|0.1.7|0.1.7| |spatial|7.3-11|7.3-11| |splines|3.3.2|3.5.1| |stats|3.3.2|3.5.1| |stats4|3.3.2|3.5.1| |stringi|1.1.7|1.4.3| |stringr|1.3.0|1.4.0| |SummarizedExperiment|1.4.0|1.12.0| |survival|2.41-3|2.44-1.1| |sys|3.2|3.1| |tcltk|3.3.2|3.5.1| |tibble|2.1.3|2.1.1| |tidyr|0.8.3|0.8.3| |tidyselect|0.2.5|0.2.5| |tools|3.3.2|3.5.1| |utf8|1.1.3|1.1.4| |utils|3.3.2|3.5.1| |viridis|0.5.0|0.5.1| |viridisLite|0.3.0|0.3.0| |withr|2.1.1|2.1.2| |xtable|1.8-2|1.8-3| |XVector|0.14.1|0.22.0| |yaml|2.1.18|2.2.0| |zlibbioc|1.20.0|1.28.0| |zoo|1.8-1|1.8-5|