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Supported Applications

DROP

  • Description

    (Detection of RNA Outlier Pipeline) pipeline to find aberrant gene expression events in RNA sequencing data.

  • Usage

    To list all executables provided by DROP, run: $ biogrids-list drop Copy to clipboard

  • Usage Notes

    The drop BioGrids title provides the following executables:

    drop snakemake.drop

    snakemake.drop is specific to the drop title and MUST be used to run drop projects.

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install drop Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    V. A. Yépez, C. Mertes, M. F. Müller, D. Klaproth-Andrade, L. Wachutka, L. Frésard, M. Gusic, I. F. Scheller, P. F. Goldberg, H. Prokisch, and J. Gagneur. 2021. Detection of aberrant gene expression events in RNA sequencing data. Nat Protoc. 16(2): 1276-1296.


    • *Full citation information available through

  • Keywords

    RNA-Seq Analysis

  • Default Versions

    Linux 64:  1.3.3 (1.8 GB)
    OS X INTEL:  1.1.3 (2.2 GB)

  • Other Versions

      Linux 64:

      1.0.3 (9.6 GB) , 1.0.4 (2.6 GB) , 1.0.5 (3.4 GB) , 1.1.3 (2.4 GB)

    • OS X INTEL:

      1.0.3 (2.7 GB) , 1.0.4 (2.2 GB) , 1.0.5 (2.2 GB)
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