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dDocent

  • Description

    dDocent is simple bash wrapper to QC, assemble, map, and call SNPs from almost any kind of RAD sequencing. If you have a reference already, dDocent can be used to call SNPs from almost any type of NGS data set.

  • Usage

    To list all executables provided by dDocent, run: $ biogrids-list ddocent Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install ddocent Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    J. B. Puritz, C. M. Hollenbeck, and G. JR.. 2014. dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms. PeerJ. 2: e431.


    • *Full citation information available through

  • Keywords

    RADSeq

  • Default Versions

    Linux 64:  2.7.8 (348.5 MB)
    OS X INTEL:  2.7.8 (240.7 MB)

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