Supported Applications

Cufflinks

Description

a reference-guided assembler that assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.
Usage
To list all executables provided by Cufflinks, run: $ biogrids-list cufflinks
Installation
Use the following command to install this title with the CLI client: $ biogrids-cli install cufflinks Available operating systems: Linux 64, OS X INTEL
Primary Citation*

C. Trapnell, B. A. Williams, G. Pertea, A. M. Mortazavi, G. Kwan, M. J. van Baren, S. L. Salzberg, B. Wold, and L. Pachter. 2010. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature Biotechnology. Nature. 28(5): 511-515.
- *Full citation information available through

Keywords

High-throughput sequencing, RNA-Sequencing, Transcript Quantification
Default Versions

Linux 64: 2.2.1 (162.8 MB)
OS X INTEL: 2.2.1 (18.8 MB)
Other Versions
- OS X INTEL:
  2.1.1 (8.6 MB)
Developers

Cole Trapnell, Geo Pertea