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BEDOPS

  • Description

    BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome for distributing whole-genome analyses across a computational cluster.

  • Usage

    To list all executables provided by BEDOPS, run: $ biogrids-list bedops Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install bedops Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    S. Neph, M. S. Kuehn, A. P. Reynolds, E. Haugen, R. E. Thurman, A. K. Johnson, E. Rynes, M. T. Maurano, J. Vierstra, S. Thomas, R. Sandstrom, R. Humbert, and S. JA.. 2012. BEDOPS: high-performance genomic feature operations. Bioinformatics.


    • *Full citation information available through

  • Keywords

    Genomics, High-throughput sequencing

  • Default Versions

    Linux 64:  2.4.41 (56.4 MB)
    OS X INTEL:  2.4.41 (121.1 MB)

  • Other Versions

      Linux 64:

      2.4.36 (65.0 MB)

    • OS X INTEL:

      2.4.36 (104.6 MB)
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