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Sambamba

  • Description

    a high performance, highly parallel, robust and fast tool (and library), written in the D programming language, for working with SAM and BAM files. Because of its efficiency, it is an important work horse running in many sequencing centres around the world today.

  • Usage

    To list all executables provided by Sambamba, run: $ biogrids-list sambamba Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install sambamba Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    A. Tarasov, A. J. Vilella, E. Cuppen, I. J. Nijman, and P. Prins. 2015. Sambamba: fast processing of NGS alignment formats. Bioinformatics. 31(12): 2032-2034.


    • *Full citation information available through

  • Keywords

    High-throughput sequencing

  • Default Versions

    Linux 64:  0.7.1 (23.6 MB)
    OS X INTEL:  0.7.1 (26.2 MB)

  • Other Versions

      Linux 64:

      0.6.8 (28.8 MB)

    • OS X INTEL:

      0.6.8 (32.2 MB)

  • Developers

    Pjotr Prins

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